J3_6HCF_026
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GAUGGUGAACUAU*AUAG*CGAACCAUC
- Length
- 26 nucleotides
- Bulged bases
- 6HCF|1|52|A|1534, 6HCF|1|52|G|1641, 6HCF|1|52|A|1642
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCF|1|52|G|1526
6HCF|1|52|A|1527
6HCF|1|52|U|1528
6HCF|1|52|G|1529
6HCF|1|52|G|1530
6HCF|1|52|U|1531
6HCF|1|52|G|1532
6HCF|1|52|A|1533
6HCF|1|52|A|1534
6HCF|1|52|C|1535
6HCF|1|52|U|1536
6HCF|1|52|A|1537
6HCF|1|52|U|1538
*
6HCF|1|52|A|1621
6HCF|1|52|U|1622
6HCF|1|52|A|1623
6HCF|1|52|G|1624
*
6HCF|1|52|C|1640
6HCF|1|52|G|1641
6HCF|1|52|A|1642
6HCF|1|52|A|1643
6HCF|1|52|C|1644
6HCF|1|52|C|1645
6HCF|1|52|A|1646
6HCF|1|52|U|1647
6HCF|1|52|C|1648
Current chains
- Chain 52
- 28S ribosomal RNA
Nearby chains
- Chain A3
- Ribosomal protein L8
- Chain C3
- uL4
- Chain L3
- eL13
- Chain N3
- Ribosomal protein L15
- Chain j3
- Ribosomal protein L37
- Chain l3
- eL39
Coloring options: