J3_6HCF_029

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCAGUUUU*AAGAAG*CGUGGAAUGC

Length

24 nucleotides

Bulged bases

6HCF|1|52|G|1724, 6HCF|1|52|A|1805, 6HCF|1|52|U|1834, 6HCF|1|52|G|1835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCF|1|52|G|1721
6HCF|1|52|C|1722
6HCF|1|52|A|1723
6HCF|1|52|G|1724
6HCF|1|52|U|1725
6HCF|1|52|U|1726
6HCF|1|52|U|1727
6HCF|1|52|U|1728
*
6HCF|1|52|A|1801
6HCF|1|52|A|1802
6HCF|1|52|G|1803
6HCF|1|52|A|1804
6HCF|1|52|A|1805
6HCF|1|52|G|1806
*
6HCF|1|52|C|1832
6HCF|1|52|G|1833
6HCF|1|52|U|1834
6HCF|1|52|G|1835
6HCF|1|52|G|1836
6HCF|1|52|A|1837
6HCF|1|52|A|1838
6HCF|1|52|U|1839
6HCF|1|52|G|1840
6HCF|1|52|C|1841

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain F3

uL30

Chain Q3

eL18

Chain T3

eL21

Chain b3

eL29