J3_6HCF_031
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUGAGAGAUGGGC*GCCGUUCCGAAGGGA*UCAGCCGAUCGAAAG
- Length
- 43 nucleotides
- Bulged bases
- 6HCF|1|52|C|2470, 6HCF|1|52|A|2472, 6HCF|1|52|G|2475, 6HCF|1|52|C|2505, 6HCF|1|52|A|2512, 6HCF|1|52|A|2513
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCF|1|52|C|2446
6HCF|1|52|U|2447
6HCF|1|52|G|2448
6HCF|1|52|A|2449
6HCF|1|52|G|2450
6HCF|1|52|A|2451
6HCF|1|52|G|2452
6HCF|1|52|A|2453
6HCF|1|52|U|2454
6HCF|1|52|G|2455
6HCF|1|52|G|2456
6HCF|1|52|G|2457
6HCF|1|52|C|2458
*
6HCF|1|52|G|2463
6HCF|1|52|C|2464
6HCF|1|52|C|2465
6HCF|1|52|G|2466
6HCF|1|52|U|2467
6HCF|1|52|U|2468
6HCF|1|52|C|2469
6HCF|1|52|C|2470
6HCF|1|52|G|2471
6HCF|1|52|A|2472
6HCF|1|52|A|2473
6HCF|1|52|G|2474
6HCF|1|52|G|2475
6HCF|1|52|G|2476
6HCF|1|52|A|2477
*
6HCF|1|52|U|2500
6HCF|1|52|C|2501
6HCF|1|52|A|2502
6HCF|1|52|G|2503
6HCF|1|52|C|2504
6HCF|1|52|C|2505
6HCF|1|52|G|2506
6HCF|1|52|A|2507
6HCF|1|52|U|2508
6HCF|1|52|C|2509
6HCF|1|52|G|2510
6HCF|1|52|A|2511
6HCF|1|52|A|2512
6HCF|1|52|A|2513
6HCF|1|52|G|2514
Current chains
- Chain 52
- 28S ribosomal RNA
Nearby chains
- Chain 82
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain A3
- Ribosomal protein L8
- Chain G3
- eL8
- Chain N3
- Ribosomal protein L15
- Chain X3
- uL23
- Chain g3
- eL34
- Chain j3
- Ribosomal protein L37
- Chain l3
- eL39
Coloring options: