J3_6HCF_032
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CACGGUGAAGAG*UUUUUUCACUGAC*GGACAGUG
- Length
- 33 nucleotides
- Bulged bases
- 6HCF|1|52|G|4076
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCF|1|52|C|3935
6HCF|1|52|A|3936
6HCF|1|52|C|3937
6HCF|1|52|G|3938
6HCF|1|52|G|3939
6HCF|1|52|U|3940
6HCF|1|52|G|3941
6HCF|1|52|A|3942
6HCF|1|52|A|3943
6HCF|1|52|G|3944
6HCF|1|52|A|3945
6HCF|1|52|G|3946
*
6HCF|1|52|U|4066
6HCF|1|52|U|4067
6HCF|1|52|U|4068
6HCF|1|52|U|4069
6HCF|1|52|U|4070
6HCF|1|52|U|4071
6HCF|1|52|C|4072
6HCF|1|52|A|4073
6HCF|1|52|C|4074
6HCF|1|52|U|4075
6HCF|1|52|G|4076
6HCF|1|52|A|4077
6HCF|1|52|C|4078
*
6HCF|1|52|G|4168
6HCF|1|52|G|4169
6HCF|1|52|A|4170
6HCF|1|52|C|4171
6HCF|1|52|A|4172
6HCF|1|52|G|4173
6HCF|1|52|U|4174
6HCF|1|52|G|4175
Current chains
- Chain 52
- 28S ribosomal RNA
Nearby chains
- Chain A3
- Ribosomal protein L8
- Chain C1
- 40S ribosomal protein S3a
- Chain G3
- eL8
- Chain N3
- Ribosomal protein L15
- Chain i3
- 60S ribosomal protein L36
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