J3_6HCF_034

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCUAUC*GUUGG*CCACUAAUAGG

Length

22 nucleotides

Bulged bases

6HCF|1|52|A|4464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCF|1|52|C|4461
6HCF|1|52|C|4462
6HCF|1|52|U|4463
6HCF|1|52|A|4464
6HCF|1|52|U|4465
6HCF|1|52|C|4466
*
6HCF|1|52|G|4491
6HCF|1|52|U|4492
6HCF|1|52|U|4493
6HCF|1|52|G|4494
6HCF|1|52|G|4495
*
6HCF|1|52|C|4505
6HCF|1|52|C|4506
6HCF|1|52|A|4507
6HCF|1|52|C|4508
6HCF|1|52|U|4509
6HCF|1|52|A|4510
6HCF|1|52|A|4511
6HCF|1|52|U|4512
6HCF|1|52|A|4513
6HCF|1|52|G|4514
6HCF|1|52|G|4515

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain B3

uL3

Chain O3

uL13

Chain V3

Ribosomal protein L23

Chain j1

eRF1(AAQ)