J3_6HCF_035
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGGUUG*CCUUC*GCACCGCACGUUCGUG
- Length
- 27 nucleotides
- Bulged bases
- 6HCF|1|52|U|4882, 6HCF|1|52|A|4938, 6HCF|1|52|C|4940, 6HCF|1|52|A|4943, 6HCF|1|52|C|4944, 6HCF|1|52|U|4950
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCF|1|52|C|4749
6HCF|1|52|G|4750
6HCF|1|52|G|4751
6HCF|1|52|U|4752
6HCF|1|52|U|4753
6HCF|1|52|G|4754
*
6HCF|1|52|C|4879
6HCF|1|52|C|4880
6HCF|1|52|U|4881
6HCF|1|52|U|4882
6HCF|1|52|C|4883
*
6HCF|1|52|G|4936
6HCF|1|52|C|4937
6HCF|1|52|A|4938
6HCF|1|52|C|4939
6HCF|1|52|C|4940
6HCF|1|52|G|4941
6HCF|1|52|C|4942
6HCF|1|52|A|4943
6HCF|1|52|C|4944
6HCF|1|52|G|4945
6HCF|1|52|U|4946
6HCF|1|52|U|4947
6HCF|1|52|C|4948
6HCF|1|52|G|4949
6HCF|1|52|U|4950
6HCF|1|52|G|4951
Current chains
- Chain 52
- 28S ribosomal RNA
Nearby chains
- Chain E3
- 60S ribosomal protein L6
- Chain M3
- Ribosomal protein L14
- Chain O3
- uL13
- Chain f3
- eL33
Coloring options: