J3_6HCF_039
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- ACCACCAG*CCAGUAA*UGAUUAAGUCCCU
- Length
- 28 nucleotides
- Bulged bases
- 6HCF|1|A1|C|1216
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCF|1|A1|A|1214
6HCF|1|A1|C|1215
6HCF|1|A1|C|1216
6HCF|1|A1|A|1217
6HCF|1|A1|C|1218
6HCF|1|A1|C|1219
6HCF|1|A1|A|1220
6HCF|1|A1|G|1221
*
6HCF|1|A1|C|1645
6HCF|1|A1|C|1646
6HCF|1|A1|A|1647
6HCF|1|A1|G|1648
6HCF|1|A1|U|1649
6HCF|1|A1|A|1650
6HCF|1|A1|A|1651
*
6HCF|1|A1|U|1673
6HCF|1|A1|G|1674
6HCF|1|A1|A|1675
6HCF|1|A1|U|1676
6HCF|1|A1|U|1677
6HCF|1|A1|A|1678
6HCF|1|A1|A|1679
6HCF|1|A1|G|1680
6HCF|1|A1|U|1681
6HCF|1|A1|C|1682
6HCF|1|A1|C|1683
6HCF|1|A1|C|1684
6HCF|1|A1|U|1685
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain 23
- Transfer RNA; tRNA
- Chain G1
- Ribosomal protein S5
- Chain R1
- Ribosomal protein S16
- Chain b1
- eS26
- Chain d1
- Ribosomal protein S28
- Chain w3
- mRNA
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