J3_6HCF_040

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGUGGA*UAC*GGAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCF|1|A1|A|1223
6HCF|1|A1|G|1224
6HCF|1|A1|U|1225
6HCF|1|A1|G|1226
6HCF|1|A1|G|1227
6HCF|1|A1|A|1228
*
6HCF|1|A1|U|1530
6HCF|1|A1|A|1531
6HCF|1|A1|C|1532
*
6HCF|1|A1|G|1638
6HCF|1|A1|G|1639
6HCF|1|A1|A|1640
6HCF|1|A1|A|1641
6HCF|1|A1|U|1642
6HCF|1|A1|U|1643

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain 23

Transfer RNA; tRNA

Chain G1

Ribosomal protein S5

Chain R1

Ribosomal protein S16

Chain T1

uS13

Chain U1

eS19