J3_6HCF_044
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CC*GAGUCG*CAAAGCGGGUGGUAAACUCCAUCUAAG
- Length
- 35 nucleotides
- Bulged bases
- 6HCF|1|52|C|309, 6HCF|1|52|G|315, 6HCF|1|52|U|316, 6HCF|1|52|U|327
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCF|1|52|C|111
6HCF|1|52|C|112
*
6HCF|1|52|G|278
6HCF|1|52|A|279
6HCF|1|52|G|280
6HCF|1|52|U|281
6HCF|1|52|C|282
6HCF|1|52|G|283
*
6HCF|1|52|C|304
6HCF|1|52|A|305
6HCF|1|52|A|306
6HCF|1|52|A|307
6HCF|1|52|G|308
6HCF|1|52|C|309
6HCF|1|52|G|310
6HCF|1|52|G|311
6HCF|1|52|G|312
6HCF|1|52|U|313
6HCF|1|52|G|314
6HCF|1|52|G|315
6HCF|1|52|U|316
6HCF|1|52|A|317
6HCF|1|52|A|318
6HCF|1|52|A|319
6HCF|1|52|C|320
6HCF|1|52|U|321
6HCF|1|52|C|322
6HCF|1|52|C|323
6HCF|1|52|A|324
6HCF|1|52|U|325
6HCF|1|52|C|326
6HCF|1|52|U|327
6HCF|1|52|A|328
6HCF|1|52|A|329
6HCF|1|52|G|330
Current chains
- Chain 52
- 28S ribosomal RNA
Nearby chains
- Chain L3
- eL13
- Chain N3
- Ribosomal protein L15
- Chain a3
- uL15
- Chain h3
- uL29
- Chain i3
- 60S ribosomal protein L36
- Chain o3
- eL42
Coloring options: