J3_6HCF_045

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAAGUC*GCCCAGCCCGUGGAC*GGUAG

Length

26 nucleotides

Bulged bases

6HCF|1|52|U|200, 6HCF|1|52|C|216, 6HCF|1|52|C|217, 6HCF|1|52|A|218, 6HCF|1|52|G|219, 6HCF|1|52|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCF|1|52|C|196
6HCF|1|52|A|197
6HCF|1|52|A|198
6HCF|1|52|G|199
6HCF|1|52|U|200
6HCF|1|52|C|201
*
6HCF|1|52|G|214
6HCF|1|52|C|215
6HCF|1|52|C|216
6HCF|1|52|C|217
6HCF|1|52|A|218
6HCF|1|52|G|219
6HCF|1|52|C|220
6HCF|1|52|C|221
6HCF|1|52|C|222
6HCF|1|52|G|223
6HCF|1|52|U|224
6HCF|1|52|G|225
6HCF|1|52|G|226
6HCF|1|52|A|227
6HCF|1|52|C|228
*
6HCF|1|52|G|240
6HCF|1|52|G|241
6HCF|1|52|U|242
6HCF|1|52|A|243
6HCF|1|52|G|244

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain C3

uL4

Chain Y3

Ribosomal protein L26