J3_6HCF_052
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UGGUUGAUAUAGACAGCAGGAUGGUGGC*GAAUCCGCUAAGGAGUG*CUCACCUGCCGAAUCAACUA
- Length
- 65 nucleotides
- Bulged bases
- 6HCF|1|52|A|1960, 6HCF|1|52|G|1975, 6HCF|1|52|G|2021
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCF|1|52|U|1950
6HCF|1|52|G|1951
6HCF|1|52|G|1952
6HCF|1|52|U|1953
6HCF|1|52|U|1954
6HCF|1|52|G|1955
6HCF|1|52|A|1956
6HCF|1|52|U|1957
6HCF|1|52|A|1958
6HCF|1|52|U|1959
6HCF|1|52|A|1960
6HCF|1|52|G|1961
6HCF|1|52|A|1962
6HCF|1|52|C|1963
6HCF|1|52|A|1964
6HCF|1|52|G|1965
6HCF|1|52|C|1966
6HCF|1|52|A|1967
6HCF|1|52|G|1968
6HCF|1|52|G|1969
6HCF|1|52|A|1970
6HCF|1|52|U|1971
6HCF|1|52|G|1972
6HCF|1|52|G|1973
6HCF|1|52|U|1974
6HCF|1|52|G|1975
6HCF|1|52|G|1976
6HCF|1|52|C|1977
*
6HCF|1|52|G|1989
6HCF|1|52|A|1990
6HCF|1|52|A|1991
6HCF|1|52|U|1992
6HCF|1|52|C|1993
6HCF|1|52|C|1994
6HCF|1|52|G|1995
6HCF|1|52|C|1996
6HCF|1|52|U|1997
6HCF|1|52|A|1998
6HCF|1|52|A|1999
6HCF|1|52|G|2000
6HCF|1|52|G|2001
6HCF|1|52|A|2002
6HCF|1|52|G|2003
6HCF|1|52|U|2004
6HCF|1|52|G|2005
*
6HCF|1|52|C|2014
6HCF|1|52|U|2015
6HCF|1|52|C|2016
6HCF|1|52|A|2017
6HCF|1|52|C|2018
6HCF|1|52|C|2019
6HCF|1|52|U|2020
6HCF|1|52|G|2021
6HCF|1|52|C|2022
6HCF|1|52|C|2023
6HCF|1|52|G|2024
6HCF|1|52|A|2025
6HCF|1|52|A|2026
6HCF|1|52|U|2027
6HCF|1|52|C|2028
6HCF|1|52|A|2029
6HCF|1|52|A|2030
6HCF|1|52|C|2031
6HCF|1|52|U|2032
6HCF|1|52|A|2033
Current chains
- Chain 52
- 28S ribosomal RNA
Nearby chains
- Chain H3
- uL6
- Chain I3
- 60S ribosomal protein L10
- Chain S3
- eL20
- Chain m3
- eL40
- Chain s3
- uL10
- Chain t3
- Ribosomal protein L12
Coloring options: