J3_6HCF_059
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UCUUAGUUGGUGGAGCGAUUUGUC*GAUAACGAACGAGAC*GCAAUA
- Length
- 45 nucleotides
- Bulged bases
- 6HCF|1|A1|A|1378
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCF|1|A1|U|1340
6HCF|1|A1|C|1341
6HCF|1|A1|U|1342
6HCF|1|A1|U|1343
6HCF|1|A1|A|1344
6HCF|1|A1|G|1345
6HCF|1|A1|U|1346
6HCF|1|A1|U|1347
6HCF|1|A1|G|1348
6HCF|1|A1|G|1349
6HCF|1|A1|U|1350
6HCF|1|A1|G|1351
6HCF|1|A1|G|1352
6HCF|1|A1|A|1353
6HCF|1|A1|G|1354
6HCF|1|A1|C|1355
6HCF|1|A1|G|1356
6HCF|1|A1|A|1357
6HCF|1|A1|U|1358
6HCF|1|A1|U|1359
6HCF|1|A1|U|1360
6HCF|1|A1|G|1361
6HCF|1|A1|U|1362
6HCF|1|A1|C|1363
*
6HCF|1|A1|G|1375
6HCF|1|A1|A|1376
6HCF|1|A1|U|1377
6HCF|1|A1|A|1378
6HCF|1|A1|A|1379
6HCF|1|A1|C|1380
6HCF|1|A1|G|1381
6HCF|1|A1|A|1382
6HCF|1|A1|A|1383
6HCF|1|A1|C|1384
6HCF|1|A1|G|1385
6HCF|1|A1|A|1386
6HCF|1|A1|G|1387
6HCF|1|A1|A|1388
6HCF|1|A1|C|1389
*
6HCF|1|A1|G|1481
6HCF|1|A1|C|1482
6HCF|1|A1|A|1483
6HCF|1|A1|A|1484
6HCF|1|A1|U|1485
6HCF|1|A1|A|1486
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain B1
- uS2
- Chain D1
- uS5
- Chain E1
- uS3
- Chain R1
- Ribosomal protein S16
- Chain S1
- eS17
- Chain V1
- uS10
- Chain e1
- uS14
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