J3_6HCJ_002

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCC*GCCGG*CCACGCGUCCCCCGCG

Length

24 nucleotides

Bulged bases

6HCJ|1|51|C|1237, 6HCJ|1|51|G|1244, 6HCJ|1|51|C|1252, 6HCJ|1|51|G|1271, 6HCJ|1|51|C|1272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|51|U|982
6HCJ|1|51|C|983
6HCJ|1|51|C|984
*
6HCJ|1|51|G|1070
6HCJ|1|51|C|1071
6HCJ|1|51|C|1072
6HCJ|1|51|G|1073
6HCJ|1|51|G|1074
*
6HCJ|1|51|C|1236
6HCJ|1|51|C|1237
6HCJ|1|51|A|1238
6HCJ|1|51|C|1239
6HCJ|1|51|G|1244
6HCJ|1|51|C|1245
6HCJ|1|51|G|1246
6HCJ|1|51|U|1247
6HCJ|1|51|C|1248
6HCJ|1|51|C|1249
6HCJ|1|51|C|1250
6HCJ|1|51|C|1251
6HCJ|1|51|C|1252
6HCJ|1|51|G|1271
6HCJ|1|51|C|1272
6HCJ|1|51|G|1273

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain C3

uL4

Chain E3

60S ribosomal protein L6

Chain F3

uL30

Chain b3

eL29