J3_6HCJ_003

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUGAACUA*UAG*CGAAC

Length

16 nucleotides

Bulged bases

6HCJ|1|51|A|1534, 6HCJ|1|51|G|1641, 6HCJ|1|51|A|1642

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|51|G|1530
6HCJ|1|51|U|1531
6HCJ|1|51|G|1532
6HCJ|1|51|A|1533
6HCJ|1|51|A|1534
6HCJ|1|51|C|1535
6HCJ|1|51|U|1536
6HCJ|1|51|A|1537
*
6HCJ|1|51|U|1622
6HCJ|1|51|A|1623
6HCJ|1|51|G|1624
*
6HCJ|1|51|C|1640
6HCJ|1|51|G|1641
6HCJ|1|51|A|1642
6HCJ|1|51|A|1643
6HCJ|1|51|C|1644

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain A3

Ribosomal protein L8

Chain C3

uL4

Chain N3

Ribosomal protein L15

Chain j3

Ribosomal protein L37

Chain l3

eL39