J3_6HCJ_005

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAAGUG*CAAGG*CCUCUG

Length

18 nucleotides

Bulged bases

6HCJ|1|51|A|2396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|51|C|2393
6HCJ|1|51|G|2394
6HCJ|1|51|A|2395
6HCJ|1|51|A|2396
6HCJ|1|51|G|2397
6HCJ|1|51|U|2398
6HCJ|1|51|G|2399
*
6HCJ|1|51|C|2805
6HCJ|1|51|A|2806
6HCJ|1|51|A|2807
6HCJ|1|51|G|2808
6HCJ|1|51|G|2809
*
6HCJ|1|51|C|2817
6HCJ|1|51|C|2818
6HCJ|1|51|U|2819
6HCJ|1|51|C|2820
6HCJ|1|51|U|2821
6HCJ|1|51|G|2822

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain R3

eL19

Chain g3

eL34