J3_6HCJ_008
3D structure
- PDB id
- 6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GACUGUUUAAUUAAAACAAAGC*GUGAUUU*GAUGAAC
- Length
- 36 nucleotides
- Bulged bases
- 6HCJ|1|51|A|3642, 6HCJ|1|51|A|3643, 6HCJ|1|51|U|3644, 6HCJ|1|51|A|3648
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCJ|1|51|G|3634
6HCJ|1|51|A|3635
6HCJ|1|51|C|3636
6HCJ|1|51|U|3637
6HCJ|1|51|G|3638
6HCJ|1|51|U|3639
6HCJ|1|51|U|3640
6HCJ|1|51|U|3641
6HCJ|1|51|A|3642
6HCJ|1|51|A|3643
6HCJ|1|51|U|3644
6HCJ|1|51|U|3645
6HCJ|1|51|A|3646
6HCJ|1|51|A|3647
6HCJ|1|51|A|3648
6HCJ|1|51|A|3649
6HCJ|1|51|C|3650
6HCJ|1|51|A|3651
6HCJ|1|51|A|3652
6HCJ|1|51|A|3653
6HCJ|1|51|G|3654
6HCJ|1|51|C|3655
*
6HCJ|1|51|G|3689
6HCJ|1|51|U|3690
6HCJ|1|51|G|3691
6HCJ|1|51|A|3692
6HCJ|1|51|U|3693
6HCJ|1|51|U|3694
6HCJ|1|51|U|3695
*
6HCJ|1|51|G|3820
6HCJ|1|51|A|3821
6HCJ|1|51|U|3822
6HCJ|1|51|G|3823
6HCJ|1|51|A|3824
6HCJ|1|51|A|3825
6HCJ|1|51|C|3826
Current chains
- Chain 51
- 28S ribosomal RNA
Nearby chains
- Chain 1
- nascent chain
- Chain A2
- Small subunit ribosomal RNA; SSU rRNA
- Chain A3
- Ribosomal protein L8
- Chain j3
- Ribosomal protein L37
- Chain n3
- eL41
- Chain p3
- eL43
Coloring options: