J3_6HCJ_010

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUCAG*CGUGGAG*CAAAAG

Length

18 nucleotides

Bulged bases

6HCJ|1|51|A|4280, 6HCJ|1|51|A|4282

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|51|C|4241
6HCJ|1|51|U|4242
6HCJ|1|51|C|4243
6HCJ|1|51|A|4244
6HCJ|1|51|G|4245
*
6HCJ|1|51|C|4263
6HCJ|1|51|G|4264
6HCJ|1|51|U|4265
6HCJ|1|51|G|4266
6HCJ|1|51|G|4267
6HCJ|1|51|A|4268
6HCJ|1|51|G|4269
*
6HCJ|1|51|C|4278
6HCJ|1|51|A|4279
6HCJ|1|51|A|4280
6HCJ|1|51|A|4281
6HCJ|1|51|A|4282
6HCJ|1|51|G|4283

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain 71

5S ribosomal RNA; 5S rRNA

Chain D3

60S ribosomal protein L5

Chain J3

Ribosomal protein L11

Chain T3

eL21

Chain o3

eL42