J3_6HCJ_012

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAUUCG*CCUGCUUCUG*CAAGG

Length

21 nucleotides

Bulged bases

6HCJ|1|51|U|4989, 6HCJ|1|51|C|4990

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|51|C|4970
6HCJ|1|51|A|4971
6HCJ|1|51|U|4972
6HCJ|1|51|U|4973
6HCJ|1|51|C|4974
6HCJ|1|51|G|4975
*
6HCJ|1|51|C|4983
6HCJ|1|51|C|4984
6HCJ|1|51|U|4985
6HCJ|1|51|G|4986
6HCJ|1|51|C|4987
6HCJ|1|51|U|4988
6HCJ|1|51|U|4989
6HCJ|1|51|C|4990
6HCJ|1|51|U|4991
6HCJ|1|51|G|4992
*
6HCJ|1|51|C|5059
6HCJ|1|51|A|5060
6HCJ|1|51|A|5061
6HCJ|1|51|G|5062
6HCJ|1|51|G|5063

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain B3

uL3

Chain P3

uL22

Chain d3

eL31