J3_6HCJ_014

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AG*CGCAAAUUA*UAGU

Length

15 nucleotides

Bulged bases

6HCJ|1|A2|U|488

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|A2|A|40
6HCJ|1|A2|G|41
*
6HCJ|1|A2|C|481
6HCJ|1|A2|G|482
6HCJ|1|A2|C|483
6HCJ|1|A2|A|484
6HCJ|1|A2|A|485
6HCJ|1|A2|A|486
6HCJ|1|A2|U|487
6HCJ|1|A2|U|488
6HCJ|1|A2|A|489
*
6HCJ|1|A2|U|511
6HCJ|1|A2|A|512
6HCJ|1|A2|G|513
6HCJ|1|A2|U|514

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain F2

eS4

Chain K2

Ribosomal protein S9 (Predicted)

Chain Y2

uS12

Chain Z2

eS24