J3_6HCJ_021

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCCCGGAC*GGGUG*UUAGAUGUC

Length

22 nucleotides

Bulged bases

6HCJ|1|A2|G|1274, 6HCJ|1|A2|G|1507, 6HCJ|1|A2|U|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|A2|G|1270
6HCJ|1|A2|C|1271
6HCJ|1|A2|C|1272
6HCJ|1|A2|C|1273
6HCJ|1|A2|G|1274
6HCJ|1|A2|G|1275
6HCJ|1|A2|A|1276
6HCJ|1|A2|C|1277
*
6HCJ|1|A2|G|1320
6HCJ|1|A2|G|1321
6HCJ|1|A2|G|1322
6HCJ|1|A2|U|1323
6HCJ|1|A2|G|1324
*
6HCJ|1|A2|U|1504
6HCJ|1|A2|U|1505
6HCJ|1|A2|A|1506
6HCJ|1|A2|G|1507
6HCJ|1|A2|A|1508
6HCJ|1|A2|U|1509
6HCJ|1|A2|G|1510
6HCJ|1|A2|U|1511
6HCJ|1|A2|C|1512

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain L2

eS10

Chain e2

uS14

Chain g2

Ribosomal protein S27a