J3_6HCJ_022
3D structure
- PDB id
- 6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UUCUUAG*CGAGACU*AGCAAUAA
- Length
- 22 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCJ|1|A2|U|1339
6HCJ|1|A2|U|1340
6HCJ|1|A2|C|1341
6HCJ|1|A2|U|1342
6HCJ|1|A2|U|1343
6HCJ|1|A2|A|1344
6HCJ|1|A2|G|1345
*
6HCJ|1|A2|C|1384
6HCJ|1|A2|G|1385
6HCJ|1|A2|A|1386
6HCJ|1|A2|G|1387
6HCJ|1|A2|A|1388
6HCJ|1|A2|C|1389
6HCJ|1|A2|U|1390
*
6HCJ|1|A2|A|1480
6HCJ|1|A2|G|1481
6HCJ|1|A2|C|1482
6HCJ|1|A2|A|1483
6HCJ|1|A2|A|1484
6HCJ|1|A2|U|1485
6HCJ|1|A2|A|1486
6HCJ|1|A2|A|1487
Current chains
- Chain A2
- 18S ribosomal RNA
Nearby chains
- Chain D2
- uS5
- Chain E2
- uS3
- Chain R2
- Ribosomal protein S16
- Chain S2
- eS17
- Chain V2
- uS10
- Chain e2
- uS14
Coloring options: