J3_6HCJ_025

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAAGUCC*GGCCCAGCCCGUGGAC*GGUAG

Length

28 nucleotides

Bulged bases

6HCJ|1|51|U|200, 6HCJ|1|51|C|216, 6HCJ|1|51|C|217, 6HCJ|1|51|A|218, 6HCJ|1|51|G|219, 6HCJ|1|51|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|51|C|196
6HCJ|1|51|A|197
6HCJ|1|51|A|198
6HCJ|1|51|G|199
6HCJ|1|51|U|200
6HCJ|1|51|C|201
6HCJ|1|51|C|202
*
6HCJ|1|51|G|213
6HCJ|1|51|G|214
6HCJ|1|51|C|215
6HCJ|1|51|C|216
6HCJ|1|51|C|217
6HCJ|1|51|A|218
6HCJ|1|51|G|219
6HCJ|1|51|C|220
6HCJ|1|51|C|221
6HCJ|1|51|C|222
6HCJ|1|51|G|223
6HCJ|1|51|U|224
6HCJ|1|51|G|225
6HCJ|1|51|G|226
6HCJ|1|51|A|227
6HCJ|1|51|C|228
*
6HCJ|1|51|G|240
6HCJ|1|51|G|241
6HCJ|1|51|U|242
6HCJ|1|51|A|243
6HCJ|1|51|G|244

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain C3

uL4

Chain Y3

Ribosomal protein L26

Chain e3

eL32