J3_6HCJ_029
3D structure
- PDB id
- 6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UUUAUCCGGUAAAGCGAAUGAUUAGA*UAUUCUCAAACUUUAAAUGGGUAAGAAG*CGUGGA
- Length
- 60 nucleotides
- Bulged bases
- 6HCJ|1|51|G|1741, 6HCJ|1|51|A|1805, 6HCJ|1|51|U|1834
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCJ|1|51|U|1726
6HCJ|1|51|U|1727
6HCJ|1|51|U|1728
6HCJ|1|51|A|1729
6HCJ|1|51|U|1730
6HCJ|1|51|C|1731
6HCJ|1|51|C|1732
6HCJ|1|51|G|1733
6HCJ|1|51|G|1734
6HCJ|1|51|U|1735
6HCJ|1|51|A|1736
6HCJ|1|51|A|1737
6HCJ|1|51|A|1738
6HCJ|1|51|G|1739
6HCJ|1|51|C|1740
6HCJ|1|51|G|1741
6HCJ|1|51|A|1742
6HCJ|1|51|A|1743
6HCJ|1|51|U|1744
6HCJ|1|51|G|1745
6HCJ|1|51|A|1746
6HCJ|1|51|U|1747
6HCJ|1|51|U|1748
6HCJ|1|51|A|1749
6HCJ|1|51|G|1750
6HCJ|1|51|A|1751
*
6HCJ|1|51|U|1779
6HCJ|1|51|A|1780
6HCJ|1|51|U|1781
6HCJ|1|51|U|1782
6HCJ|1|51|C|1783
6HCJ|1|51|U|1784
6HCJ|1|51|C|1785
6HCJ|1|51|A|1786
6HCJ|1|51|A|1787
6HCJ|1|51|A|1788
6HCJ|1|51|C|1789
6HCJ|1|51|U|1790
6HCJ|1|51|U|1791
6HCJ|1|51|U|1792
6HCJ|1|51|A|1793
6HCJ|1|51|A|1794
6HCJ|1|51|A|1795
6HCJ|1|51|U|1796
6HCJ|1|51|G|1797
6HCJ|1|51|G|1798
6HCJ|1|51|G|1799
6HCJ|1|51|U|1800
6HCJ|1|51|A|1801
6HCJ|1|51|A|1802
6HCJ|1|51|G|1803
6HCJ|1|51|A|1804
6HCJ|1|51|A|1805
6HCJ|1|51|G|1806
*
6HCJ|1|51|C|1832
6HCJ|1|51|G|1833
6HCJ|1|51|U|1834
6HCJ|1|51|G|1835
6HCJ|1|51|G|1836
6HCJ|1|51|A|1837
Current chains
- Chain 51
- 28S ribosomal RNA
Nearby chains
- Chain 71
- 5S ribosomal RNA; 5S rRNA
- Chain D3
- 60S ribosomal protein L5
- Chain F3
- uL30
- Chain I3
- 60S ribosomal protein L10
- Chain T3
- eL21
- Chain b3
- eL29
- Chain q3
- Transfer RNA; tRNA
Coloring options: