J3_6HCJ_033

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGG*CUGACCCGGUGAGGC*GCUCCGGGGACAG

Length

31 nucleotides

Bulged bases

6HCJ|1|51|G|4076, 6HCJ|1|51|G|4084, 6HCJ|1|51|G|4086, 6HCJ|1|51|G|4087, 6HCJ|1|51|C|4162, 6HCJ|1|51|U|4163

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|51|C|3937
6HCJ|1|51|G|3938
6HCJ|1|51|G|3939
*
6HCJ|1|51|C|4074
6HCJ|1|51|U|4075
6HCJ|1|51|G|4076
6HCJ|1|51|A|4077
6HCJ|1|51|C|4078
6HCJ|1|51|C|4079
6HCJ|1|51|C|4080
6HCJ|1|51|G|4081
6HCJ|1|51|G|4082
6HCJ|1|51|U|4083
6HCJ|1|51|G|4084
6HCJ|1|51|A|4085
6HCJ|1|51|G|4086
6HCJ|1|51|G|4087
6HCJ|1|51|C|4088
*
6HCJ|1|51|G|4161
6HCJ|1|51|C|4162
6HCJ|1|51|U|4163
6HCJ|1|51|C|4164
6HCJ|1|51|C|4165
6HCJ|1|51|G|4166
6HCJ|1|51|G|4167
6HCJ|1|51|G|4168
6HCJ|1|51|G|4169
6HCJ|1|51|A|4170
6HCJ|1|51|C|4171
6HCJ|1|51|A|4172
6HCJ|1|51|G|4173

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain 81

5.8S ribosomal RNA; 5.8S rRNA

Chain A3

Ribosomal protein L8

Chain G3

eL8

Chain N3

Ribosomal protein L15

Chain X3

uL23