J3_6HCJ_034

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUAAGGCG*CGCUUG*CCGUGAAAGCGGG

Length

27 nucleotides

Bulged bases

6HCJ|1|51|A|4234, 6HCJ|1|51|G|4329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|51|C|4231
6HCJ|1|51|U|4232
6HCJ|1|51|A|4233
6HCJ|1|51|A|4234
6HCJ|1|51|G|4235
6HCJ|1|51|G|4236
6HCJ|1|51|C|4237
6HCJ|1|51|G|4238
*
6HCJ|1|51|C|4286
6HCJ|1|51|G|4287
6HCJ|1|51|C|4288
6HCJ|1|51|U|4289
6HCJ|1|51|U|4290
6HCJ|1|51|G|4291
*
6HCJ|1|51|C|4318
6HCJ|1|51|C|4319
6HCJ|1|51|G|4320
6HCJ|1|51|U|4321
6HCJ|1|51|G|4322
6HCJ|1|51|A|4323
6HCJ|1|51|A|4324
6HCJ|1|51|A|4325
6HCJ|1|51|G|4326
6HCJ|1|51|C|4327
6HCJ|1|51|G|4328
6HCJ|1|51|G|4329
6HCJ|1|51|G|4330

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain D3

60S ribosomal protein L5

Chain J3

Ribosomal protein L11

Chain T3

eL21

Chain o3

eL42