J3_6HCJ_040
3D structure
- PDB id
- 6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GCUUAAUUUG*CGGGAAACCUCACCCG*CGGGGCUGC
- Length
- 35 nucleotides
- Bulged bases
- 6HCJ|1|A2|G|1256, 6HCJ|1|A2|A|1258, 6HCJ|1|A2|A|1260
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCJ|1|A2|G|1236
6HCJ|1|A2|C|1237
6HCJ|1|A2|U|1238
6HCJ|1|A2|U|1239
6HCJ|1|A2|A|1240
6HCJ|1|A2|A|1241
6HCJ|1|A2|U|1242
6HCJ|1|A2|U|1243
6HCJ|1|A2|U|1244
6HCJ|1|A2|G|1245
*
6HCJ|1|A2|C|1254
6HCJ|1|A2|G|1255
6HCJ|1|A2|G|1256
6HCJ|1|A2|G|1257
6HCJ|1|A2|A|1258
6HCJ|1|A2|A|1259
6HCJ|1|A2|A|1260
6HCJ|1|A2|C|1261
6HCJ|1|A2|C|1262
6HCJ|1|A2|U|1263
6HCJ|1|A2|C|1264
6HCJ|1|A2|A|1265
6HCJ|1|A2|C|1266
6HCJ|1|A2|C|1267
6HCJ|1|A2|C|1268
6HCJ|1|A2|G|1269
*
6HCJ|1|A2|C|1513
6HCJ|1|A2|G|1514
6HCJ|1|A2|G|1515
6HCJ|1|A2|G|1516
6HCJ|1|A2|G|1517
6HCJ|1|A2|C|1518
6HCJ|1|A2|U|1519
6HCJ|1|A2|G|1520
6HCJ|1|A2|C|1521
Current chains
- Chain A2
- 18S ribosomal RNA
Nearby chains
- Chain L2
- eS10
- Chain Q2
- uS19
- Chain R2
- Ribosomal protein S16
- Chain T2
- uS13
- Chain V2
- uS10
- Chain e2
- uS14
- Chain g2
- Ribosomal protein S27a
- Chain q3
- Transfer RNA; tRNA
Coloring options: