Loop J3_6HCJ

3D structure

PDB id: 6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å

Loop

Sequence: GCCCGGACACGGACAGGAUUG*CUCGAUUCCGUGGGUG*UUAGAUGUC
Length: 46 nucleotides
Bulged bases: 6HCJ|1|A2|G|1274, 6HCJ|1|A2|G|1285, 6HCJ|1|A2|G|1507, 6HCJ|1|A2|U|1509
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6HCJ|1|A2|G|1270
6HCJ|1|A2|C|1271
6HCJ|1|A2|C|1272
6HCJ|1|A2|C|1273
6HCJ|1|A2|G|1274
6HCJ|1|A2|G|1275
6HCJ|1|A2|A|1276
6HCJ|1|A2|C|1277
6HCJ|1|A2|A|1278
6HCJ|1|A2|C|1279
6HCJ|1|A2|G|1280
6HCJ|1|A2|G|1281
6HCJ|1|A2|A|1282
6HCJ|1|A2|C|1283
6HCJ|1|A2|A|1284
6HCJ|1|A2|G|1285
6HCJ|1|A2|G|1286
6HCJ|1|A2|A|1287
6HCJ|1|A2|U|1288
6HCJ|1|A2|U|1289
6HCJ|1|A2|G|1290
*
6HCJ|1|A2|C|1309
6HCJ|1|A2|U|1310
6HCJ|1|A2|C|1311
6HCJ|1|A2|G|1312
6HCJ|1|A2|A|1313
6HCJ|1|A2|U|1314
6HCJ|1|A2|U|1315
6HCJ|1|A2|C|1316
6HCJ|1|A2|C|1317
6HCJ|1|A2|G|1318
6HCJ|1|A2|U|1319
6HCJ|1|A2|G|1320
6HCJ|1|A2|G|1321
6HCJ|1|A2|G|1322
6HCJ|1|A2|U|1323
6HCJ|1|A2|G|1324
*
6HCJ|1|A2|U|1504
6HCJ|1|A2|U|1505
6HCJ|1|A2|A|1506
6HCJ|1|A2|G|1507
6HCJ|1|A2|A|1508
6HCJ|1|A2|U|1509
6HCJ|1|A2|G|1510
6HCJ|1|A2|U|1511
6HCJ|1|A2|C|1512

Current chains

Chain A2: 18S ribosomal RNA

Nearby chains

Chain L2: eS10
Chain N2: 40S ribosomal protein S12
Chain e2: uS14
Chain g2: Ribosomal protein S27a

J3_6HCJ_041