3D structure

PDB id
6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
GGUUCCA*UGGGUCAGUC*GUAC
Length
21 nucleotides
Bulged bases
6HCJ|1|51|C|2437
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6HCJ|1|51|G|2406
6HCJ|1|51|G|2407
6HCJ|1|51|U|2408
6HCJ|1|51|U|2409
6HCJ|1|51|C|2410
6HCJ|1|51|C|2411
6HCJ|1|51|A|2412
*
6HCJ|1|51|U|2432
6HCJ|1|51|G|2433
6HCJ|1|51|G|2434
6HCJ|1|51|G|2435
6HCJ|1|51|U|2436
6HCJ|1|51|C|2437
6HCJ|1|51|A|2438
6HCJ|1|51|G|2439
6HCJ|1|51|U|2440
6HCJ|1|51|C|2441
*
6HCJ|1|51|G|2781
6HCJ|1|51|U|2782
6HCJ|1|51|A|2783
6HCJ|1|51|C|2784

Current chains

Chain 51
28S ribosomal RNA

Nearby chains

Chain 1
nascent chain
Chain 81
5.8S ribosomal RNA; 5.8S rRNA
Chain R3
eL19
Chain X3
uL23
Chain g3
eL34
Chain h3
uL29
Chain j3
Ribosomal protein L37
Chain l3
eL39

Coloring options:

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