J3_6HCJ_045
3D structure
- PDB id
- 6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GGUUCCA*UGGGUCAGUC*GUAC
- Length
- 21 nucleotides
- Bulged bases
- 6HCJ|1|51|C|2437
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCJ|1|51|G|2406
6HCJ|1|51|G|2407
6HCJ|1|51|U|2408
6HCJ|1|51|U|2409
6HCJ|1|51|C|2410
6HCJ|1|51|C|2411
6HCJ|1|51|A|2412
*
6HCJ|1|51|U|2432
6HCJ|1|51|G|2433
6HCJ|1|51|G|2434
6HCJ|1|51|G|2435
6HCJ|1|51|U|2436
6HCJ|1|51|C|2437
6HCJ|1|51|A|2438
6HCJ|1|51|G|2439
6HCJ|1|51|U|2440
6HCJ|1|51|C|2441
*
6HCJ|1|51|G|2781
6HCJ|1|51|U|2782
6HCJ|1|51|A|2783
6HCJ|1|51|C|2784
Current chains
- Chain 51
- 28S ribosomal RNA
Nearby chains
- Chain 1
- nascent chain
- Chain 81
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain R3
- eL19
- Chain X3
- uL23
- Chain g3
- eL34
- Chain h3
- uL29
- Chain j3
- Ribosomal protein L37
- Chain l3
- eL39
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