J3_6HCJ_046
3D structure
- PDB id
- 6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CUGAGAGAUGG*CGUUCCGAAGGGACG*CUCAGCCGAUCGAAAG
- Length
- 42 nucleotides
- Bulged bases
- 6HCJ|1|51|C|2470, 6HCJ|1|51|A|2472, 6HCJ|1|51|G|2474, 6HCJ|1|51|G|2475, 6HCJ|1|51|A|2502, 6HCJ|1|51|A|2512, 6HCJ|1|51|A|2513
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCJ|1|51|C|2446
6HCJ|1|51|U|2447
6HCJ|1|51|G|2448
6HCJ|1|51|A|2449
6HCJ|1|51|G|2450
6HCJ|1|51|A|2451
6HCJ|1|51|G|2452
6HCJ|1|51|A|2453
6HCJ|1|51|U|2454
6HCJ|1|51|G|2455
6HCJ|1|51|G|2456
*
6HCJ|1|51|C|2465
6HCJ|1|51|G|2466
6HCJ|1|51|U|2467
6HCJ|1|51|U|2468
6HCJ|1|51|C|2469
6HCJ|1|51|C|2470
6HCJ|1|51|G|2471
6HCJ|1|51|A|2472
6HCJ|1|51|A|2473
6HCJ|1|51|G|2474
6HCJ|1|51|G|2475
6HCJ|1|51|G|2476
6HCJ|1|51|A|2477
6HCJ|1|51|C|2478
6HCJ|1|51|G|2479
*
6HCJ|1|51|C|2499
6HCJ|1|51|U|2500
6HCJ|1|51|C|2501
6HCJ|1|51|A|2502
6HCJ|1|51|G|2503
6HCJ|1|51|C|2504
6HCJ|1|51|C|2505
6HCJ|1|51|G|2506
6HCJ|1|51|A|2507
6HCJ|1|51|U|2508
6HCJ|1|51|C|2509
6HCJ|1|51|G|2510
6HCJ|1|51|A|2511
6HCJ|1|51|A|2512
6HCJ|1|51|A|2513
6HCJ|1|51|G|2514
Current chains
- Chain 51
- 28S ribosomal RNA
Nearby chains
- Chain 81
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain A3
- Ribosomal protein L8
- Chain G3
- eL8
- Chain N3
- Ribosomal protein L15
- Chain X3
- uL23
- Chain g3
- eL34
- Chain j3
- Ribosomal protein L37
- Chain l3
- eL39
Coloring options: