3D structure

PDB id
6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CUGAGAGAUGG*CGUUCCGAAGGGACG*CUCAGCCGAUCGAAAG
Length
42 nucleotides
Bulged bases
6HCJ|1|51|C|2470, 6HCJ|1|51|A|2472, 6HCJ|1|51|G|2474, 6HCJ|1|51|G|2475, 6HCJ|1|51|A|2502, 6HCJ|1|51|A|2512, 6HCJ|1|51|A|2513
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6HCJ|1|51|C|2446
6HCJ|1|51|U|2447
6HCJ|1|51|G|2448
6HCJ|1|51|A|2449
6HCJ|1|51|G|2450
6HCJ|1|51|A|2451
6HCJ|1|51|G|2452
6HCJ|1|51|A|2453
6HCJ|1|51|U|2454
6HCJ|1|51|G|2455
6HCJ|1|51|G|2456
*
6HCJ|1|51|C|2465
6HCJ|1|51|G|2466
6HCJ|1|51|U|2467
6HCJ|1|51|U|2468
6HCJ|1|51|C|2469
6HCJ|1|51|C|2470
6HCJ|1|51|G|2471
6HCJ|1|51|A|2472
6HCJ|1|51|A|2473
6HCJ|1|51|G|2474
6HCJ|1|51|G|2475
6HCJ|1|51|G|2476
6HCJ|1|51|A|2477
6HCJ|1|51|C|2478
6HCJ|1|51|G|2479
*
6HCJ|1|51|C|2499
6HCJ|1|51|U|2500
6HCJ|1|51|C|2501
6HCJ|1|51|A|2502
6HCJ|1|51|G|2503
6HCJ|1|51|C|2504
6HCJ|1|51|C|2505
6HCJ|1|51|G|2506
6HCJ|1|51|A|2507
6HCJ|1|51|U|2508
6HCJ|1|51|C|2509
6HCJ|1|51|G|2510
6HCJ|1|51|A|2511
6HCJ|1|51|A|2512
6HCJ|1|51|A|2513
6HCJ|1|51|G|2514

Current chains

Chain 51
28S ribosomal RNA

Nearby chains

Chain 81
5.8S ribosomal RNA; 5.8S rRNA
Chain A3
Ribosomal protein L8
Chain G3
eL8
Chain N3
Ribosomal protein L15
Chain X3
uL23
Chain g3
eL34
Chain j3
Ribosomal protein L37
Chain l3
eL39

Coloring options:

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