Loop J3_6HCJ

3D structure

PDB id: 6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å

Loop

Sequence: GUAAUC*GUUC*GUGGGAUUAUGACUGAACGCCUCUAAGUCAGAAUCCCGCC
Length: 50 nucleotides
Bulged bases: 6HCJ|1|51|A|4589, 6HCJ|1|51|U|4677, 6HCJ|1|51|G|4694, 6HCJ|1|51|C|4698, 6HCJ|1|51|A|4708
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6HCJ|1|51|G|4587
6HCJ|1|51|U|4588
6HCJ|1|51|A|4589
6HCJ|1|51|A|4590
6HCJ|1|51|U|4591
6HCJ|1|51|C|4592
*
6HCJ|1|51|G|4618
6HCJ|1|51|U|4619
6HCJ|1|51|U|4620
6HCJ|1|51|C|4621
*
6HCJ|1|51|G|4676
6HCJ|1|51|U|4677
6HCJ|1|51|G|4678
6HCJ|1|51|G|4679
6HCJ|1|51|G|4680
6HCJ|1|51|A|4681
6HCJ|1|51|U|4682
6HCJ|1|51|U|4683
6HCJ|1|51|A|4684
6HCJ|1|51|U|4685
6HCJ|1|51|G|4686
6HCJ|1|51|A|4687
6HCJ|1|51|C|4688
6HCJ|1|51|U|4689
6HCJ|1|51|G|4690
6HCJ|1|51|A|4691
6HCJ|1|51|A|4692
6HCJ|1|51|C|4693
6HCJ|1|51|G|4694
6HCJ|1|51|C|4695
6HCJ|1|51|C|4696
6HCJ|1|51|U|4697
6HCJ|1|51|C|4698
6HCJ|1|51|U|4699
6HCJ|1|51|A|4700
6HCJ|1|51|A|4701
6HCJ|1|51|G|4702
6HCJ|1|51|U|4703
6HCJ|1|51|C|4704
6HCJ|1|51|A|4705
6HCJ|1|51|G|4706
6HCJ|1|51|A|4707
6HCJ|1|51|A|4708
6HCJ|1|51|U|4709
6HCJ|1|51|C|4710
6HCJ|1|51|C|4711
6HCJ|1|51|C|4712
6HCJ|1|51|G|4713
6HCJ|1|51|C|4714
6HCJ|1|51|C|4715

Current chains

Chain 51: 28S ribosomal RNA

Nearby chains

Chain B3: uL3
Chain H3: uL6
Chain O3: uL13
Chain V3: Ribosomal protein L23
Chain m3: eL40

J3_6HCJ_048