J3_6HCJ_049

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGGUUG*CCUUC*GCACCGCACGUUCGUG

Length

27 nucleotides

Bulged bases

6HCJ|1|51|U|4882, 6HCJ|1|51|A|4938, 6HCJ|1|51|C|4940, 6HCJ|1|51|A|4943, 6HCJ|1|51|C|4944, 6HCJ|1|51|U|4950

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|51|C|4749
6HCJ|1|51|G|4750
6HCJ|1|51|G|4751
6HCJ|1|51|U|4752
6HCJ|1|51|U|4753
6HCJ|1|51|G|4754
*
6HCJ|1|51|C|4879
6HCJ|1|51|C|4880
6HCJ|1|51|U|4881
6HCJ|1|51|U|4882
6HCJ|1|51|C|4883
*
6HCJ|1|51|G|4936
6HCJ|1|51|C|4937
6HCJ|1|51|A|4938
6HCJ|1|51|C|4939
6HCJ|1|51|C|4940
6HCJ|1|51|G|4941
6HCJ|1|51|C|4942
6HCJ|1|51|A|4943
6HCJ|1|51|C|4944
6HCJ|1|51|G|4945
6HCJ|1|51|U|4946
6HCJ|1|51|U|4947
6HCJ|1|51|C|4948
6HCJ|1|51|G|4949
6HCJ|1|51|U|4950
6HCJ|1|51|G|4951

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain E3

60S ribosomal protein L6

Chain M3

Ribosomal protein L14

Chain O3

uL13

Chain f3

eL33