J3_6HCJ_052

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGGAGC*GCUACACUG*CGUGAUGGGGAUCGGGGAUUGCAAUUAUUCCCCAUGAACGAGGAA

Length

60 nucleotides

Bulged bases

6HCJ|1|A2|U|1535, 6HCJ|1|A2|G|1603, 6HCJ|1|A2|U|1621, 6HCJ|1|A2|U|1622, 6HCJ|1|A2|A|1623

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|A2|U|1225
6HCJ|1|A2|G|1226
6HCJ|1|A2|G|1227
6HCJ|1|A2|A|1228
6HCJ|1|A2|G|1229
6HCJ|1|A2|C|1230
*
6HCJ|1|A2|G|1528
6HCJ|1|A2|C|1529
6HCJ|1|A2|U|1530
6HCJ|1|A2|A|1531
6HCJ|1|A2|C|1532
6HCJ|1|A2|A|1533
6HCJ|1|A2|C|1534
6HCJ|1|A2|U|1535
6HCJ|1|A2|G|1536
*
6HCJ|1|A2|C|1597
6HCJ|1|A2|G|1598
6HCJ|1|A2|U|1599
6HCJ|1|A2|G|1600
6HCJ|1|A2|A|1601
6HCJ|1|A2|U|1602
6HCJ|1|A2|G|1603
6HCJ|1|A2|G|1604
6HCJ|1|A2|G|1605
6HCJ|1|A2|G|1606
6HCJ|1|A2|A|1607
6HCJ|1|A2|U|1608
6HCJ|1|A2|C|1609
6HCJ|1|A2|G|1610
6HCJ|1|A2|G|1611
6HCJ|1|A2|G|1612
6HCJ|1|A2|G|1613
6HCJ|1|A2|A|1614
6HCJ|1|A2|U|1615
6HCJ|1|A2|U|1616
6HCJ|1|A2|G|1617
6HCJ|1|A2|C|1618
6HCJ|1|A2|A|1619
6HCJ|1|A2|A|1620
6HCJ|1|A2|U|1621
6HCJ|1|A2|U|1622
6HCJ|1|A2|A|1623
6HCJ|1|A2|U|1624
6HCJ|1|A2|U|1625
6HCJ|1|A2|C|1626
6HCJ|1|A2|C|1627
6HCJ|1|A2|C|1628
6HCJ|1|A2|C|1629
6HCJ|1|A2|A|1630
6HCJ|1|A2|U|1631
6HCJ|1|A2|G|1632
6HCJ|1|A2|A|1633
6HCJ|1|A2|A|1634
6HCJ|1|A2|C|1635
6HCJ|1|A2|G|1636
6HCJ|1|A2|A|1637
6HCJ|1|A2|G|1638
6HCJ|1|A2|G|1639
6HCJ|1|A2|A|1640
6HCJ|1|A2|A|1641

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain 33

Transfer RNA; tRNA

Chain G2

Ribosomal protein S5

Chain Q2

uS19

Chain R2

Ribosomal protein S16

Chain T2

uS13

Chain U2

eS19

Chain a2

eS25

Chain e2

uS14