J3_6HCM_005

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

CCGAAGUGG*CCAAG*CUCUGG

Length

20 nucleotides

Bulged bases

6HCM|1|52|A|2396

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCM|1|52|C|2392
6HCM|1|52|C|2393
6HCM|1|52|G|2394
6HCM|1|52|A|2395
6HCM|1|52|A|2396
6HCM|1|52|G|2397
6HCM|1|52|U|2398
6HCM|1|52|G|2399
6HCM|1|52|G|2400
*
6HCM|1|52|C|2804
6HCM|1|52|C|2805
6HCM|1|52|A|2806
6HCM|1|52|A|2807
6HCM|1|52|G|2808
*
6HCM|1|52|C|2818
6HCM|1|52|U|2819
6HCM|1|52|C|2820
6HCM|1|52|U|2821
6HCM|1|52|G|2822
6HCM|1|52|G|2823

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain R3

eL19

Chain d3

eL31

Chain g3

eL34