J3_6HCM_007

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

CUAUC*GUUG*CACUAAUAG

Length

18 nucleotides

Bulged bases

6HCM|1|52|A|4464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCM|1|52|C|4462
6HCM|1|52|U|4463
6HCM|1|52|A|4464
6HCM|1|52|U|4465
6HCM|1|52|C|4466
*
6HCM|1|52|G|4491
6HCM|1|52|U|4492
6HCM|1|52|U|4493
6HCM|1|52|G|4494
*
6HCM|1|52|C|4506
6HCM|1|52|A|4507
6HCM|1|52|C|4508
6HCM|1|52|U|4509
6HCM|1|52|A|4510
6HCM|1|52|A|4511
6HCM|1|52|U|4512
6HCM|1|52|A|4513
6HCM|1|52|G|4514

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain B3

uL3

Chain O3

uL13

Chain V3

Ribosomal protein L23