J3_6HCM_016

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

GCCCGGAC*GGGUG*UUAGAUGUC

Length

22 nucleotides

Bulged bases

6HCM|1|A1|G|1274, 6HCM|1|A1|G|1507, 6HCM|1|A1|U|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCM|1|A1|G|1270
6HCM|1|A1|C|1271
6HCM|1|A1|C|1272
6HCM|1|A1|C|1273
6HCM|1|A1|G|1274
6HCM|1|A1|G|1275
6HCM|1|A1|A|1276
6HCM|1|A1|C|1277
*
6HCM|1|A1|G|1320
6HCM|1|A1|G|1321
6HCM|1|A1|G|1322
6HCM|1|A1|U|1323
6HCM|1|A1|G|1324
*
6HCM|1|A1|U|1504
6HCM|1|A1|U|1505
6HCM|1|A1|A|1506
6HCM|1|A1|G|1507
6HCM|1|A1|A|1508
6HCM|1|A1|U|1509
6HCM|1|A1|G|1510
6HCM|1|A1|U|1511
6HCM|1|A1|C|1512

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain L1

eS10

Chain e1

uS14

Chain g1

Ribosomal protein S27a

Chain j1

eRF1(AAQ)