J3_6HCM_018

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

GUG*UGUC*GAUAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCM|1|A1|G|1349
6HCM|1|A1|U|1350
6HCM|1|A1|G|1351
*
6HCM|1|A1|U|1360
6HCM|1|A1|G|1361
6HCM|1|A1|U|1362
6HCM|1|A1|C|1363
*
6HCM|1|A1|G|1375
6HCM|1|A1|A|1376
6HCM|1|A1|U|1377
6HCM|1|A1|A|1378
6HCM|1|A1|A|1379
6HCM|1|A1|C|1380

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain B1

uS2

Chain D1

uS5

Chain S1

eS17