3D structure

PDB id
6HCM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit collided di-ribosome (stalled monosome)
Experimental method
ELECTRON MICROSCOPY
Resolution
6.8 Å

Loop

Sequence
GUG*UGUC*GAUAAC
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6HCM|1|A1|G|1349
6HCM|1|A1|U|1350
6HCM|1|A1|G|1351
*
6HCM|1|A1|U|1360
6HCM|1|A1|G|1361
6HCM|1|A1|U|1362
6HCM|1|A1|C|1363
*
6HCM|1|A1|G|1375
6HCM|1|A1|A|1376
6HCM|1|A1|U|1377
6HCM|1|A1|A|1378
6HCM|1|A1|A|1379
6HCM|1|A1|C|1380

Current chains

Chain A1
18S ribosomal RNA

Nearby chains

Chain B1
uS2
Chain D1
uS5
Chain S1
eS17

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.2881 s