J3_6HCM_021

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

CAAGUC*GCCCAGCCCGUGGACG*CGGUAG

Length

28 nucleotides

Bulged bases

6HCM|1|52|U|200, 6HCM|1|52|C|216, 6HCM|1|52|C|217, 6HCM|1|52|A|218, 6HCM|1|52|G|219, 6HCM|1|52|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCM|1|52|C|196
6HCM|1|52|A|197
6HCM|1|52|A|198
6HCM|1|52|G|199
6HCM|1|52|U|200
6HCM|1|52|C|201
*
6HCM|1|52|G|214
6HCM|1|52|C|215
6HCM|1|52|C|216
6HCM|1|52|C|217
6HCM|1|52|A|218
6HCM|1|52|G|219
6HCM|1|52|C|220
6HCM|1|52|C|221
6HCM|1|52|C|222
6HCM|1|52|G|223
6HCM|1|52|U|224
6HCM|1|52|G|225
6HCM|1|52|G|226
6HCM|1|52|A|227
6HCM|1|52|C|228
6HCM|1|52|G|229
*
6HCM|1|52|C|239
6HCM|1|52|G|240
6HCM|1|52|G|241
6HCM|1|52|U|242
6HCM|1|52|A|243
6HCM|1|52|G|244

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain 82

5.8S ribosomal RNA; 5.8S rRNA

Chain C3

uL4

Chain Y3

Ribosomal protein L26