J3_6HCM_024

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

UCCCC*GGGCCGGGCC*GGGCCACGCGUCCCCCGCG

Length

34 nucleotides

Bulged bases

6HCM|1|52|C|1237, 6HCM|1|52|C|1239, 6HCM|1|52|G|1244, 6HCM|1|52|C|1245, 6HCM|1|52|G|1246, 6HCM|1|52|G|1271, 6HCM|1|52|C|1272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCM|1|52|U|982
6HCM|1|52|C|983
6HCM|1|52|C|984
6HCM|1|52|C|985
6HCM|1|52|C|986
*
6HCM|1|52|G|1068
6HCM|1|52|G|1069
6HCM|1|52|G|1070
6HCM|1|52|C|1071
6HCM|1|52|C|1072
6HCM|1|52|G|1073
6HCM|1|52|G|1074
6HCM|1|52|G|1075
6HCM|1|52|C|1076
6HCM|1|52|C|1077
*
6HCM|1|52|G|1233
6HCM|1|52|G|1234
6HCM|1|52|G|1235
6HCM|1|52|C|1236
6HCM|1|52|C|1237
6HCM|1|52|A|1238
6HCM|1|52|C|1239
6HCM|1|52|G|1244
6HCM|1|52|C|1245
6HCM|1|52|G|1246
6HCM|1|52|U|1247
6HCM|1|52|C|1248
6HCM|1|52|C|1249
6HCM|1|52|C|1250
6HCM|1|52|C|1251
6HCM|1|52|C|1252
6HCM|1|52|G|1271
6HCM|1|52|C|1272
6HCM|1|52|G|1273

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain C3

uL4

Chain E3

60S ribosomal protein L6

Chain F3

uL30

Chain b3

eL29