J3_6HCM_025

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

GCUCUCCCACC*GGGGGC*GGGC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCM|1|52|G|1098
6HCM|1|52|C|1099
6HCM|1|52|U|1100
6HCM|1|52|C|1101
6HCM|1|52|U|1102
6HCM|1|52|C|1103
6HCM|1|52|C|1104
6HCM|1|52|C|1105
6HCM|1|52|A|1106
6HCM|1|52|C|1107
6HCM|1|52|C|1108
*
6HCM|1|52|G|1162
6HCM|1|52|G|1163
6HCM|1|52|G|1164
6HCM|1|52|G|1165
6HCM|1|52|G|1166
6HCM|1|52|C|1167
*
6HCM|1|52|G|1194
6HCM|1|52|G|1195
6HCM|1|52|G|1196
6HCM|1|52|C|1197

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain D3

60S ribosomal protein L5

Chain S3

eL20