J3_6HCM_028

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

GCAG*CGUAGCGGUC*GUCGUCCGAC

Length

24 nucleotides

Bulged bases

6HCM|1|52|A|1613

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCM|1|52|G|1545
6HCM|1|52|C|1546
6HCM|1|52|A|1547
6HCM|1|52|G|1548
*
6HCM|1|52|C|1580
6HCM|1|52|G|1581
6HCM|1|52|U|1582
6HCM|1|52|A|1583
6HCM|1|52|G|1584
6HCM|1|52|C|1585
6HCM|1|52|G|1586
6HCM|1|52|G|1587
6HCM|1|52|U|1588
6HCM|1|52|C|1589
*
6HCM|1|52|G|1605
6HCM|1|52|U|1606
6HCM|1|52|C|1607
6HCM|1|52|G|1608
6HCM|1|52|U|1609
6HCM|1|52|C|1610
6HCM|1|52|C|1611
6HCM|1|52|G|1612
6HCM|1|52|A|1613
6HCM|1|52|C|1614

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain A3

Ribosomal protein L8

Chain R3

eL19

Chain g3

eL34

Chain j3

Ribosomal protein L37

Chain p3

eL43