3D structure

PDB id
6HCM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit collided di-ribosome (stalled monosome)
Experimental method
ELECTRON MICROSCOPY
Resolution
6.8 Å

Loop

Sequence
UUGGUUGAUAUAGACAGCAGGAUGGUGGCC*GGAAUCCGCUAAGGAGUG*CUCACCUGCCGAAUCAACUAG
Length
69 nucleotides
Bulged bases
6HCM|1|52|A|1960, 6HCM|1|52|G|1975, 6HCM|1|52|G|2021
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6HCM|1|52|U|1949
6HCM|1|52|U|1950
6HCM|1|52|G|1951
6HCM|1|52|G|1952
6HCM|1|52|U|1953
6HCM|1|52|U|1954
6HCM|1|52|G|1955
6HCM|1|52|A|1956
6HCM|1|52|U|1957
6HCM|1|52|A|1958
6HCM|1|52|U|1959
6HCM|1|52|A|1960
6HCM|1|52|G|1961
6HCM|1|52|A|1962
6HCM|1|52|C|1963
6HCM|1|52|A|1964
6HCM|1|52|G|1965
6HCM|1|52|C|1966
6HCM|1|52|A|1967
6HCM|1|52|G|1968
6HCM|1|52|G|1969
6HCM|1|52|A|1970
6HCM|1|52|U|1971
6HCM|1|52|G|1972
6HCM|1|52|G|1973
6HCM|1|52|U|1974
6HCM|1|52|G|1975
6HCM|1|52|G|1976
6HCM|1|52|C|1977
6HCM|1|52|C|1978
*
6HCM|1|52|G|1988
6HCM|1|52|G|1989
6HCM|1|52|A|1990
6HCM|1|52|A|1991
6HCM|1|52|U|1992
6HCM|1|52|C|1993
6HCM|1|52|C|1994
6HCM|1|52|G|1995
6HCM|1|52|C|1996
6HCM|1|52|U|1997
6HCM|1|52|A|1998
6HCM|1|52|A|1999
6HCM|1|52|G|2000
6HCM|1|52|G|2001
6HCM|1|52|A|2002
6HCM|1|52|G|2003
6HCM|1|52|U|2004
6HCM|1|52|G|2005
*
6HCM|1|52|C|2014
6HCM|1|52|U|2015
6HCM|1|52|C|2016
6HCM|1|52|A|2017
6HCM|1|52|C|2018
6HCM|1|52|C|2019
6HCM|1|52|U|2020
6HCM|1|52|G|2021
6HCM|1|52|C|2022
6HCM|1|52|C|2023
6HCM|1|52|G|2024
6HCM|1|52|A|2025
6HCM|1|52|A|2026
6HCM|1|52|U|2027
6HCM|1|52|C|2028
6HCM|1|52|A|2029
6HCM|1|52|A|2030
6HCM|1|52|C|2031
6HCM|1|52|U|2032
6HCM|1|52|A|2033
6HCM|1|52|G|2034

Current chains

Chain 52
28S ribosomal RNA

Nearby chains

Chain 72
5S ribosomal RNA; 5S rRNA
Chain H3
uL6
Chain I3
60S ribosomal protein L10
Chain S3
eL20
Chain m3
eL40
Chain s3
uL10
Chain t3
Ribosomal protein L12

Coloring options:

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