3D structure

PDB id
6HCM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit collided di-ribosome (stalled monosome)
Experimental method
ELECTRON MICROSCOPY
Resolution
6.8 Å

Loop

Sequence
CGGUUG*CCUUC*GCACCGCACGUUCGUG
Length
27 nucleotides
Bulged bases
6HCM|1|52|U|4882, 6HCM|1|52|A|4938, 6HCM|1|52|C|4940, 6HCM|1|52|A|4943, 6HCM|1|52|C|4944, 6HCM|1|52|U|4950
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6HCM|1|52|C|4749
6HCM|1|52|G|4750
6HCM|1|52|G|4751
6HCM|1|52|U|4752
6HCM|1|52|U|4753
6HCM|1|52|G|4754
*
6HCM|1|52|C|4879
6HCM|1|52|C|4880
6HCM|1|52|U|4881
6HCM|1|52|U|4882
6HCM|1|52|C|4883
*
6HCM|1|52|G|4936
6HCM|1|52|C|4937
6HCM|1|52|A|4938
6HCM|1|52|C|4939
6HCM|1|52|C|4940
6HCM|1|52|G|4941
6HCM|1|52|C|4942
6HCM|1|52|A|4943
6HCM|1|52|C|4944
6HCM|1|52|G|4945
6HCM|1|52|U|4946
6HCM|1|52|U|4947
6HCM|1|52|C|4948
6HCM|1|52|G|4949
6HCM|1|52|U|4950
6HCM|1|52|G|4951

Current chains

Chain 52
28S ribosomal RNA

Nearby chains

Chain E3
60S ribosomal protein L6
Chain M3
Ribosomal protein L14
Chain O3
uL13
Chain f3
eL33

Coloring options:

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