J3_6HCM_036

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

CCAUACC*GGG*UG

Length

12 nucleotides

Bulged bases

6HCM|1|72|U|12

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCM|1|72|C|9
6HCM|1|72|C|10
6HCM|1|72|A|11
6HCM|1|72|U|12
6HCM|1|72|A|13
6HCM|1|72|C|14
6HCM|1|72|C|15
*
6HCM|1|72|G|64
6HCM|1|72|G|65
6HCM|1|72|G|66
*
6HCM|1|72|U|109
6HCM|1|72|G|110

Current chains

Chain 72

5S ribosomal RNA

Nearby chains

Chain 52

Large subunit ribosomal RNA; LSU rRNA

Chain D3

60S ribosomal protein L5

Chain I3

60S ribosomal protein L10

Chain J3

Ribosomal protein L11

Chain T3

eL21