J3_6HCM_040

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

AGUGGA*UAC*GGAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCM|1|A1|A|1223
6HCM|1|A1|G|1224
6HCM|1|A1|U|1225
6HCM|1|A1|G|1226
6HCM|1|A1|G|1227
6HCM|1|A1|A|1228
*
6HCM|1|A1|U|1530
6HCM|1|A1|A|1531
6HCM|1|A1|C|1532
*
6HCM|1|A1|G|1638
6HCM|1|A1|G|1639
6HCM|1|A1|A|1640
6HCM|1|A1|A|1641
6HCM|1|A1|U|1642
6HCM|1|A1|U|1643

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain 23

Transfer RNA; tRNA

Chain G1

Ribosomal protein S5

Chain R1

Ribosomal protein S16

Chain T1

uS13

Chain U1

eS19