3D structure

PDB id
6HCM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit collided di-ribosome (stalled monosome)
Experimental method
ELECTRON MICROSCOPY
Resolution
6.8 Å

Loop

Sequence
GCUUAAUUUG*CGGGAAACCUCACCCG*CGGGGCUGC
Length
35 nucleotides
Bulged bases
6HCM|1|A1|G|1256, 6HCM|1|A1|A|1258, 6HCM|1|A1|A|1260
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6HCM|1|A1|G|1236
6HCM|1|A1|C|1237
6HCM|1|A1|U|1238
6HCM|1|A1|U|1239
6HCM|1|A1|A|1240
6HCM|1|A1|A|1241
6HCM|1|A1|U|1242
6HCM|1|A1|U|1243
6HCM|1|A1|U|1244
6HCM|1|A1|G|1245
*
6HCM|1|A1|C|1254
6HCM|1|A1|G|1255
6HCM|1|A1|G|1256
6HCM|1|A1|G|1257
6HCM|1|A1|A|1258
6HCM|1|A1|A|1259
6HCM|1|A1|A|1260
6HCM|1|A1|C|1261
6HCM|1|A1|C|1262
6HCM|1|A1|U|1263
6HCM|1|A1|C|1264
6HCM|1|A1|A|1265
6HCM|1|A1|C|1266
6HCM|1|A1|C|1267
6HCM|1|A1|C|1268
6HCM|1|A1|G|1269
*
6HCM|1|A1|C|1513
6HCM|1|A1|G|1514
6HCM|1|A1|G|1515
6HCM|1|A1|G|1516
6HCM|1|A1|G|1517
6HCM|1|A1|C|1518
6HCM|1|A1|U|1519
6HCM|1|A1|G|1520
6HCM|1|A1|C|1521

Current chains

Chain A1
18S ribosomal RNA

Nearby chains

Chain L1
eS10
Chain Q1
uS19
Chain R1
Ribosomal protein S16
Chain T1
uS13
Chain V1
uS10
Chain e1
uS14
Chain g1
Ribosomal protein S27a
Chain j1
eRF1(AAQ)

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.1369 s