J3_6HCM_047

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

CAGUC*GUGCG*CGAUG

Length

15 nucleotides

Bulged bases

6HCM|1|52|C|704

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCM|1|52|C|451
6HCM|1|52|A|452
6HCM|1|52|G|453
6HCM|1|52|U|454
6HCM|1|52|C|455
*
6HCM|1|52|G|701
6HCM|1|52|U|702
6HCM|1|52|G|703
6HCM|1|52|C|704
6HCM|1|52|G|705
*
6HCM|1|52|C|1292
6HCM|1|52|G|1293
6HCM|1|52|A|1294
6HCM|1|52|U|1295
6HCM|1|52|G|1296

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain E3

60S ribosomal protein L6

Chain e3

eL32

Chain f3

eL33

Chain r3

eL28