J3_6HCM_051

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

GCAGUUU*AGAAG*CGUGGAAUGC

Length

22 nucleotides

Bulged bases

6HCM|1|52|G|1724, 6HCM|1|52|A|1805, 6HCM|1|52|U|1834, 6HCM|1|52|G|1835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCM|1|52|G|1721
6HCM|1|52|C|1722
6HCM|1|52|A|1723
6HCM|1|52|G|1724
6HCM|1|52|U|1725
6HCM|1|52|U|1726
6HCM|1|52|U|1727
*
6HCM|1|52|A|1802
6HCM|1|52|G|1803
6HCM|1|52|A|1804
6HCM|1|52|A|1805
6HCM|1|52|G|1806
*
6HCM|1|52|C|1832
6HCM|1|52|G|1833
6HCM|1|52|U|1834
6HCM|1|52|G|1835
6HCM|1|52|G|1836
6HCM|1|52|A|1837
6HCM|1|52|A|1838
6HCM|1|52|U|1839
6HCM|1|52|G|1840
6HCM|1|52|C|1841

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain F3

uL30

Chain Q3

eL18

Chain T3

eL21

Chain b3

eL29