J3_6HCM_053
3D structure
- PDB id
- 6HCM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit collided di-ribosome (stalled monosome)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.8 Å
Loop
- Sequence
- CUGAGAGAUGG*CGUUCCGAAGGG*CAGCCGAUCGAAAG
- Length
- 37 nucleotides
- Bulged bases
- 6HCM|1|52|C|2470, 6HCM|1|52|A|2472, 6HCM|1|52|G|2475, 6HCM|1|52|C|2505, 6HCM|1|52|A|2512, 6HCM|1|52|A|2513
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCM|1|52|C|2446
6HCM|1|52|U|2447
6HCM|1|52|G|2448
6HCM|1|52|A|2449
6HCM|1|52|G|2450
6HCM|1|52|A|2451
6HCM|1|52|G|2452
6HCM|1|52|A|2453
6HCM|1|52|U|2454
6HCM|1|52|G|2455
6HCM|1|52|G|2456
*
6HCM|1|52|C|2465
6HCM|1|52|G|2466
6HCM|1|52|U|2467
6HCM|1|52|U|2468
6HCM|1|52|C|2469
6HCM|1|52|C|2470
6HCM|1|52|G|2471
6HCM|1|52|A|2472
6HCM|1|52|A|2473
6HCM|1|52|G|2474
6HCM|1|52|G|2475
6HCM|1|52|G|2476
*
6HCM|1|52|C|2501
6HCM|1|52|A|2502
6HCM|1|52|G|2503
6HCM|1|52|C|2504
6HCM|1|52|C|2505
6HCM|1|52|G|2506
6HCM|1|52|A|2507
6HCM|1|52|U|2508
6HCM|1|52|C|2509
6HCM|1|52|G|2510
6HCM|1|52|A|2511
6HCM|1|52|A|2512
6HCM|1|52|A|2513
6HCM|1|52|G|2514
Current chains
- Chain 52
- 28S ribosomal RNA
Nearby chains
- Chain 82
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain A3
- Ribosomal protein L8
- Chain G3
- eL8
- Chain N3
- Ribosomal protein L15
- Chain X3
- uL23
- Chain g3
- eL34
- Chain j3
- Ribosomal protein L37
- Chain l3
- eL39
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