3D structure

PDB id
6HCM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit collided di-ribosome (stalled monosome)
Experimental method
ELECTRON MICROSCOPY
Resolution
6.8 Å

Loop

Sequence
CUGAGAGAUGG*CGUUCCGAAGGG*CAGCCGAUCGAAAG
Length
37 nucleotides
Bulged bases
6HCM|1|52|C|2470, 6HCM|1|52|A|2472, 6HCM|1|52|G|2475, 6HCM|1|52|C|2505, 6HCM|1|52|A|2512, 6HCM|1|52|A|2513
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6HCM|1|52|C|2446
6HCM|1|52|U|2447
6HCM|1|52|G|2448
6HCM|1|52|A|2449
6HCM|1|52|G|2450
6HCM|1|52|A|2451
6HCM|1|52|G|2452
6HCM|1|52|A|2453
6HCM|1|52|U|2454
6HCM|1|52|G|2455
6HCM|1|52|G|2456
*
6HCM|1|52|C|2465
6HCM|1|52|G|2466
6HCM|1|52|U|2467
6HCM|1|52|U|2468
6HCM|1|52|C|2469
6HCM|1|52|C|2470
6HCM|1|52|G|2471
6HCM|1|52|A|2472
6HCM|1|52|A|2473
6HCM|1|52|G|2474
6HCM|1|52|G|2475
6HCM|1|52|G|2476
*
6HCM|1|52|C|2501
6HCM|1|52|A|2502
6HCM|1|52|G|2503
6HCM|1|52|C|2504
6HCM|1|52|C|2505
6HCM|1|52|G|2506
6HCM|1|52|A|2507
6HCM|1|52|U|2508
6HCM|1|52|C|2509
6HCM|1|52|G|2510
6HCM|1|52|A|2511
6HCM|1|52|A|2512
6HCM|1|52|A|2513
6HCM|1|52|G|2514

Current chains

Chain 52
28S ribosomal RNA

Nearby chains

Chain 82
5.8S ribosomal RNA; 5.8S rRNA
Chain A3
Ribosomal protein L8
Chain G3
eL8
Chain N3
Ribosomal protein L15
Chain X3
uL23
Chain g3
eL34
Chain j3
Ribosomal protein L37
Chain l3
eL39

Coloring options:

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