J3_6HCQ_002

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

UCC*GCCGG*CCACGCGUCCCCCGCG

Length

24 nucleotides

Bulged bases

6HCQ|1|51|C|1237, 6HCQ|1|51|G|1244, 6HCQ|1|51|C|1252, 6HCQ|1|51|G|1271, 6HCQ|1|51|C|1272

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCQ|1|51|U|982
6HCQ|1|51|C|983
6HCQ|1|51|C|984
*
6HCQ|1|51|G|1070
6HCQ|1|51|C|1071
6HCQ|1|51|C|1072
6HCQ|1|51|G|1073
6HCQ|1|51|G|1074
*
6HCQ|1|51|C|1236
6HCQ|1|51|C|1237
6HCQ|1|51|A|1238
6HCQ|1|51|C|1239
6HCQ|1|51|G|1244
6HCQ|1|51|C|1245
6HCQ|1|51|G|1246
6HCQ|1|51|U|1247
6HCQ|1|51|C|1248
6HCQ|1|51|C|1249
6HCQ|1|51|C|1250
6HCQ|1|51|C|1251
6HCQ|1|51|C|1252
6HCQ|1|51|G|1271
6HCQ|1|51|C|1272
6HCQ|1|51|G|1273

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain C3

uL4

Chain E3

60S ribosomal protein L6

Chain F3

uL30

Chain b3

eL29