J3_6HCQ_003

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GUGAACUA*UAG*CGAAC

Length

16 nucleotides

Bulged bases

6HCQ|1|51|A|1534, 6HCQ|1|51|G|1641, 6HCQ|1|51|A|1642

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCQ|1|51|G|1530
6HCQ|1|51|U|1531
6HCQ|1|51|G|1532
6HCQ|1|51|A|1533
6HCQ|1|51|A|1534
6HCQ|1|51|C|1535
6HCQ|1|51|U|1536
6HCQ|1|51|A|1537
*
6HCQ|1|51|U|1622
6HCQ|1|51|A|1623
6HCQ|1|51|G|1624
*
6HCQ|1|51|C|1640
6HCQ|1|51|G|1641
6HCQ|1|51|A|1642
6HCQ|1|51|A|1643
6HCQ|1|51|C|1644

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain A3

Ribosomal protein L8

Chain C3

uL4

Chain N3

Ribosomal protein L15

Chain j3

Ribosomal protein L37

Chain l3

eL39